Selected RBPs (up to 12):
Nothing is selected
All Cluster I Cluster II Cluster III Cluster IV Cluster V Cluster VI Cluster VII
Master protein UniProt Gene symbol Synonyms UniProt protein names Peak binding time (min) Cluster Peak broadness
P62306 SNRPF PBSCF Small nuclear ribonucleoprotein F;
Sm protein F
 52.6 N/A, Quantification quality is not sufficient 1.44
Q14CZ7 FASTKD3 FAST kinase domain-containing protein 3, mitochondrial 52.8 N/A, Not enriched over no 4sU control 2.64
P19525 EIF2AK2 PKR, PRKR Interferon-induced, double-stranded RNA-activated protein kinase;
Eukaryotic translation initiation factor 2-alpha kinase 2;
Interferon-inducible RNA-dependent protein kinase;
P1/eIF-2A protein kinase;
Protein kinase RNA-activated;
Tyrosine-protein kinase EIF2AK2;
p68 kinase
 52.9 N/A, Not enriched over no 4sU control 1.23
Q32NC0 C18orf21 PNAS-124, PNAS-131, XTP13 UPF0711 protein C18orf21;
HBV X-transactivated gene 13 protein;
HBV XAg-transactivated protein 13
 55.1 N/A, Not enriched over no 4sU control 1.71
P0DMV8 HSPA1A HSP72, HSPA1, HSX70 Heat shock 70 kDa protein 1A;
Heat shock 70 kDa protein 1
 55.3 N/A, Quantification quality is not sufficient 2.51
P02751 FN1 FN Fibronectin;
Cold-insoluble globulin;
Anastellin;
Ugl-Y1;
Ugl-Y2;
Ugl-Y3
 55.4 N/A, Not enriched over no 4sU control 2.22
Q86X95 CIR1 CIR Corepressor interacting with RBPJ 1;
CBF1-interacting corepressor;
Recepin
 55.5 N/A, Not previously reported as mRNP 1.81
Q9H6W3 RIOX1 C14orf169, MAPJD, NO66 Ribosomal oxygenase 1;
60S ribosomal protein L8 histidine hydroxylase;
Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66;
Myc-associated protein with JmjC domain;
Nucleolar protein 66;
Ribosomal oxygenase NO66
 55.6 N/A, Not previously reported as mRNP 1.47
O00257 CBX4 E3 SUMO-protein ligase CBX4;
Chromobox protein homolog 4;
Polycomb 2 homolog
 55.7 N/A, Not enriched over no 4sU control 2.53
P52565 ARHGDIA GDIA1 Rho GDP-dissociation inhibitor 1;
Rho-GDI alpha
 55.8 N/A, Not enriched over no 4sU control 2.69
Q9H7E9 C8orf33 UPF0488 protein C8orf33 55.9 N/A, Not enriched over no 4sU control 1.52
P25940 COL5A3 Collagen alpha-3(V) chain 56.0 N/A, Not enriched over no 4sU control 1.30
P49327 FASN FAS Fatty acid synthase;
Type I fatty acid synthase;
[Acyl-carrier-protein] S-acetyltransferase;
[Acyl-carrier-protein] S-malonyltransferase;
3-oxoacyl-[acyl-carrier-protein] synthase;
3-oxoacyl-[acyl-carrier-protein] reductase;
3-hydroxyacyl-[acyl-carrier-protein] dehydratase;
Enoyl-[acyl-carrier-protein] reductase;
Acyl-[acyl-carrier-protein] hydrolase
 56.4 N/A, Not enriched over no 4sU control 1.92
Q6IQ21 ZNF770 Zinc finger protein 770 56.4 N/A, Not enriched over no 4sU control 1.50
P02458 COL2A1 Collagen alpha-1(II) chain;
Alpha-1 type II collagen;
Collagen alpha-1(II) chain;
Chondrocalcin
 57.3 N/A, Not enriched over no 4sU control 2.42
Q04837 SSBP1 SSBP Single-stranded DNA-binding protein, mitochondrial;
PWP1-interacting protein 17
 57.6 N/A, Quantification quality is not sufficient 2.06
P20929 NEB Nebulin 58.0 N/A, Not enriched over no 4sU control 1.61
Q5D862 FLG2 IFPS Filaggrin-2;
Intermediate filament-associated and psoriasis-susceptibility protein
 58.2 N/A, Not enriched over no 4sU control 2.20
P17275 JUNB Transcription factor JunB;
Transcription factor AP-1 subunit JunB
 58.8 N/A, Not previously reported as mRNP 1.27
Q8IVS2 MCAT MT Malonyl-CoA-acyl carrier protein transacylase, mitochondrial;
Mitochondrial malonyl CoA:ACP acyltransferase;
Mitochondrial malonyltransferase;
[Acyl-carrier-protein] malonyltransferase
 58.9 N/A, Not enriched over no 4sU control 1.56