Selected RBPs (up to 12):
Nothing is selected
All Cluster I Cluster II Cluster III Cluster IV Cluster V Cluster VI Cluster VII
Master protein UniProt Gene symbol Synonyms UniProt protein names Peak binding time (min) Cluster Peak broadness
Q9NXE8 CWC25 CCDC49 Pre-mRNA-splicing factor CWC25 homolog;
Coiled-coil domain-containing protein 49;
Spliceosome-associated protein homolog CWC25
 41.9 N/A, Not previously reported as mRNP 1.50
Q15286 RAB35 RAB1C, RAY Ras-related protein Rab-35;
GTP-binding protein RAY;
Ras-related protein Rab-1C
 42.0 N/A, Not enriched over no 4sU control 2.22
O14775 GNB5 Guanine nucleotide-binding protein subunit beta-5;
Gbeta5;
Transducin beta chain 5
 42.1 N/A, Not enriched over no 4sU control 1.15
P60709 ACTB Actin, cytoplasmic 1;
Beta-actin;
Actin, cytoplasmic 1, N-terminally processed
 42.4 N/A, Quantification quality is not sufficient 1.45
P09234 SNRPC U1 small nuclear ribonucleoprotein C 42.5 N/A, Not enriched over no 4sU control 1.35
Q6Y1H2 HACD2 PTPLB Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2;
3-hydroxyacyl-CoA dehydratase 2;
Protein-tyrosine phosphatase-like member B
 42.5 N/A, Not previously reported as mRNP 1.36
P49759 CLK1 CLK Dual specificity protein kinase CLK1;
CDC-like kinase 1
 42.9 N/A, Not previously reported as mRNP 1.72
Q8IXZ2 ZC3H3 KIAA0150, SMICL, ZC3HDC3 Zinc finger CCCH domain-containing protein 3;
Smad-interacting CPSF-like factor
 43.3 N/A, Not previously reported as mRNP 1.30
P01833 PIGR Polymeric immunoglobulin receptor;
Hepatocellular carcinoma-associated protein TB6;
Secretory component
 43.5 N/A, Not enriched over no 4sU control 0.74
Q6ZUT1 NKAPD1 C11orf57 Uncharacterized protein NKAPD1;
NKAP domain containing protein 1
 43.7 N/A, Not enriched over no 4sU control 1.75
Q9BWG6 SCNM1 Sodium channel modifier 1 43.8 N/A, Not enriched over no 4sU control 1.46
O94992 HEXIM1 CLP1, EDG1, HIS1, MAQ1 Protein HEXIM1;
Cardiac lineage protein 1;
Estrogen down-regulated gene 1 protein;
Hexamethylene bis-acetamide-inducible protein 1;
Menage a quatre protein 1
 43.9 N/A, Not previously reported as mRNP 1.31
P20962 PTMS Parathymosin 43.9 N/A, Not previously reported as mRNP 1.40
Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 44.3 N/A, Not enriched over no 4sU control 1.19
Q00403 GTF2B TF2B, TFIIB Transcription initiation factor IIB;
General transcription factor TFIIB;
S300-II
 44.4 N/A, Not previously reported as mRNP 1.02
P05787 KRT8 CYK8 Keratin, type II cytoskeletal 8;
Cytokeratin-8;
Keratin-8;
Type-II keratin Kb8
 44.6 N/A, Not previously reported as mRNP 2.22
P23528 CFL1 CFL Cofilin-1;
18 kDa phosphoprotein;
Cofilin, non-muscle isoform
 44.7 N/A, Not enriched over no 4sU control 2.38
Q9BQ61 TRIR C19orf43 Telomerase RNA component interacting RNase;
Exoribonuclease TRIR
 44.7 N/A, Not previously reported as mRNP 1.50
Q8IZT6 ASPM MCPH5 Abnormal spindle-like microcephaly-associated protein;
Abnormal spindle protein homolog
 44.8 N/A, Not previously reported as mRNP 1.35
Q01650 SLC7A5 CD98LC, LAT1, MPE16 Large neutral amino acids transporter small subunit 1;
4F2 light chain;
CD98 light chain;
Integral membrane protein E16;
L-type amino acid transporter 1;
Solute carrier family 7 member 5;
y+ system cationic amino acid transporter
 44.9 N/A, Not previously reported as mRNP 1.38