Selected RBPs (up to 12):
Nothing is selected
All Cluster I Cluster II Cluster III Cluster IV Cluster V Cluster VI Cluster VII
Master protein UniProt Gene symbol Synonyms UniProt protein names Peak binding time (min) Cluster Peak broadness
P60953 CDC42 Cell division control protein 42 homolog;
G25K GTP-binding protein
 20.2 N/A, Not enriched over no 4sU control 2.96
Q12870 TCF15 BHLHA40, BHLHEC2 Transcription factor 15;
Class A basic helix-loop-helix protein 40;
Paraxis;
Protein bHLH-EC2
 22.1 N/A, Not enriched over no 4sU control 2.22
Q08554 DSC1 CDHF1 Desmocollin-1;
Cadherin family member 1;
Desmosomal glycoprotein 2/3
 23.8 N/A, Not enriched over no 4sU control 1.67
Q99623 PHB2 BAP, REA Prohibitin-2;
B-cell receptor-associated protein BAP37;
D-prohibitin;
Repressor of estrogen receptor activity
 24.6 N/A, Quantification quality is not sufficient 2.35
Q9HCE5 METTL14 KIAA1627 N6-adenosine-methyltransferase non-catalytic subunit;
Methyltransferase-like protein 14
 25.5 N/A, Not enriched over no 4sU control 1.43
P04259 KRT6B K6B, KRTL1 Keratin, type II cytoskeletal 6B;
Cytokeratin-6B;
Keratin-6B;
Type-II keratin Kb10
 26.3 N/A, Not enriched over no 4sU control 0.87
P60468 SEC61B Protein transport protein Sec61 subunit beta 26.7 N/A, Quantification quality is not sufficient 4.28
Q13472 TOP3A TOP3 DNA topoisomerase 3-alpha;
DNA topoisomerase III alpha
 28.5 N/A, Not previously reported as mRNP 2.34
O60885 BRD4 HUNK1 Bromodomain-containing protein 4;
Protein HUNK1
 30.2 N/A, Not enriched over no 4sU control 2.79
Q96GJ1 TRMT2B CXorf34 tRNA (uracil-5-)-methyltransferase homolog B;
TRM2 homolog B;
rRNA (uracil-5-)-methyltransferase TRMT2B
 31.1 N/A, Not previously reported as mRNP 2.21
Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 31.7 N/A, Not enriched over no 4sU control 0.90
P28074 PSMB5 LMPX, MB1, X Proteasome subunit beta type-5;
Macropain epsilon chain;
Multicatalytic endopeptidase complex epsilon chain;
Proteasome chain 6;
Proteasome epsilon chain;
Proteasome subunit MB1;
Proteasome subunit X
 32.4 N/A, Not enriched over no 4sU control 2.22
P25311 AZGP1 ZAG, ZNGP1 Zinc-alpha-2-glycoprotein 32.9 N/A, Not enriched over no 4sU control 3.11
O75526 RBMXL2 HNRNPGT RNA-binding motif protein, X-linked-like-2;
Testis-specific heterogeneous nuclear ribonucleoprotein G-T
 33.0 N/A, Not enriched over no 4sU control 1.24
Q6UW68 TMEM205 UNQ501/PRO1018 Transmembrane protein 205 33.9 N/A, Not enriched over no 4sU control 1.46
Q5T653 MRPL2 CGI-22 Large ribosomal subunit protein uL2m;
39S ribosomal protein L2, mitochondrial
 34.2 N/A, Quantification quality is not sufficient 4.64
Q86TB9 PATL1 OK/KNS-cl.5 Protein PAT1 homolog 1;
PAT1-like protein 1;
Protein PAT1 homolog b
 34.2 N/A, Not enriched over no 4sU control 4.22
O43242 PSMD3 26S proteasome non-ATPase regulatory subunit 3;
26S proteasome regulatory subunit RPN3;
26S proteasome regulatory subunit S3;
Proteasome subunit p58
 34.5 N/A, Not enriched over no 4sU control 1.79
Q13686 ALKBH1 ABH, ABH1, ALKBH Nucleic acid dioxygenase ALKBH1;
Alkylated DNA repair protein alkB homolog 1;
Alpha-ketoglutarate-dependent dioxygenase ABH1;
DNA 6mA demethylase;
DNA N6-methyl adenine demethylase ALKBH1;
DNA lyase ABH1;
DNA oxidative demethylase ALKBH1;
mRNA N(3)-methylcytidine demethylase
 34.7 N/A, Not enriched over no 4sU control 4.12
Q15773 MLF2 Myeloid leukemia factor 2;
Myelodysplasia-myeloid leukemia factor 2
 34.7 N/A, Not enriched over no 4sU control 1.72