ZCCHC17
| UniProt Accession | Q9NP64 UniProt 🔗 |
|---|---|
| Synonyms | HSPC243, HSPC251, LDC4, PS1D |
| UniProt protein names | Zinc finger CCHC domain-containing protein 17;Nucleolar protein of 40 kDa;Pnn-interacting nucleolar protein;Putative S1 RNA-binding domain protein |
| Peak binding time (min) | 44.4 |
| Cluster | II |
| Cluster membership (corr) | 0.994 |
| Peak broadness (1 / std of log2 intensities) | 1.91 |
| Cluster expected from GO | IV |
| Subcellular localization (Human Protein Atlas) | Nuclear speckles |
| Subcellular localization (Human Cell Map) | NMF result: no prediction, SAFE result: no prediction |
| RMSE (expected - observed) | 0.45 |
| Link to current annotations (QuickGO) | QuickGO 🔗 |
mRNA binding dynamics
Gene Ontology based expectation (GO 2021-09-01)
Protein interactors of ZCCHC17 in mRNP (BioGRID)
| Master Protein UniProt | Gene Symbol | Peak binding time (min) | Cluster | Subcellular localization (Human Protein Atlas) | Subcellular localization (Human Cell Map) | Number of evidences (experiment types) | Number of evidences (publications) |
|---|---|---|---|---|---|---|---|
| Q9H307 | PNN | 64.6 | IV | Nuclear speckles | NMF result: nuclear body, SAFE result: spliceosomal complex II | 2 | 2 |
| Q96ME7 | ZNF512 | 45.2 | III | Nucleus | NMF result: nucleoplasm, SAFE result: chromatin, nucleoplasm | 1 | 1 |
| O43159 | RRP8 | 43.2 | II | Cytosol;Nucleoli;Nucleus | NMF result: nucleolus, SAFE result: splicing speckles, nucleolus | 1 | 1 |
| P31943 | HNRNPH1 | 40.8 | II | Cytosol;Nucleoplasm | NMF result: nuclear body, SAFE result: paraspeckles | 1 | 1 |
| Q6PJT7 | ZC3H14 | 65.7 | IV | Nuclear speckles | NMF result: nuclear body, SAFE result: spliceosomal complex II | 1 | 1 |
| Q15287 | RNPS1 | 58.0 | IV | Nucleoplasm | NMF result: nuclear body, SAFE result: splicing speckles, nucleolus | 1 | 1 |
| Q9BWF3 | RBM4 | 40.3 | II | Cytosol;Nucleoplasm | NMF result: no prediction, SAFE result: no prediction | 1 | 1 |
| Q9UQ35 | SRRM2 | 42.5 | III | Nuclear speckles | NMF result: nuclear body, SAFE result: splicing speckles, nucleolus | 1 | 1 |
| Q8N5F7 | NKAP | 47.0 | III | Cytosol;Nucleoplasm | NMF result: nuclear body, SAFE result: spliceosomal complex II | 1 | 1 |
| Q1ED39 | KNOP1 | 38.4 | II | Cytosol;Nucleoli | NMF result: nucleolus, SAFE result: chromatin, nucleoplasm | 1 | 1 |