RBM38
| UniProt Accession | Q9H0Z9 UniProt 🔗 |
|---|---|
| Synonyms | RNPC1, SEB4 |
| UniProt protein names | RNA-binding protein 38;CLL-associated antigen KW-5;HSRNASEB;RNA-binding motif protein 38;RNA-binding region-containing protein 1;ssDNA-binding protein SEB4 |
| Peak binding time (min) | 57.5 |
| Cluster | IV |
| Cluster membership (corr) | 0.983 |
| Peak broadness (1 / std of log2 intensities) | 2.53 |
| Cluster expected from GO | IV |
| Subcellular localization (Human Protein Atlas) | Cytosol;Nucleoplasm |
| Subcellular localization (Human Cell Map) | NMF result: no prediction, SAFE result: no prediction |
| RMSE (expected - observed) | 0.35 |
| Link to current annotations (QuickGO) | QuickGO 🔗 |
mRNA binding dynamics
Gene Ontology based expectation (GO 2021-09-01)
Protein interactors of RBM38 in mRNP (BioGRID)
| Master Protein UniProt | Gene Symbol | Peak binding time (min) | Cluster | Subcellular localization (Human Protein Atlas) | Subcellular localization (Human Cell Map) | Number of evidences (experiment types) | Number of evidences (publications) |
|---|---|---|---|---|---|---|---|
| O43251 | RBFOX2 | 45.8 | III | Nucleoplasm | NMF result: nuclear body, SAFE result: paraspeckles | 1 | 2 |
| Q96EY7 | PTCD3 | 77.4 | V | Mitochondria | NMF result: mitochondrial matrix, SAFE result: mitochondrial inner membrane, mitochondrial intermembrane space, mitochondrial matrix | 1 | 1 |
| P31943 | HNRNPH1 | 40.8 | II | Cytosol;Nucleoplasm | NMF result: nuclear body, SAFE result: paraspeckles | 1 | 1 |